Mastering Single Cell RNA-seq Data Analysis with Cellenics®

Course Overview

This comprehensive course is designed to equip you with the knowledge and skills needed to analyze single cell RNA-seq data using our web-based platform. From data uploading and processing to integration, exploration, and visualization, we will cover everything you need to know to become an expert in single cell RNA-seq data analysis.

Please note: you can enroll in the course even if you don't have your own data to analyze yet. In fact, you can easily use one of the datasets that Cellenics® provides with the dataset repository feature. It includes data from published papers ready to be analysed in Cellenics®!

Course price: $450 USD

Included in the online course: video lessons that you can watch at your own pace + PDF course material + 30-minute personalised session with one of our bioinformaticians + optional live group sessions

Module 1: Introduction

Introduction to single-cell RNA sequencing

Experimental design

Module 2: Uploading and Processing Data

From FASTQ files to count matrices

Learn how to convert single cell RNA-seq data from different formats, demultiplex, and upload them to Cellenics®

Understand the seven steps of data processing and how to get optimal results

Explore real-world examples of data processing challenges and how to face them

Module 3: Data Integration

Data normalization, feature selection, and dimensionality reduction

Discover different types of data integration methods

Learn how to check the quality of data integration

Module 4: Data Exploration

Dive into the world of data exploration with Cellenics®

Discover different types of data visualization: learn about UMAP, t-SNE and clustering resolution 

Learn how to annotate clusters manually and automatically

Create marker heatmaps and conduct differential expression analysis to identify key genes and pathways

Module 5: Visualization and Presentation

Explore the different Plots and Tables modules available in Cellenics® and learn how to use them effectively (including Trajectory Analysis)

Create publication-ready figures with Cellenics®